GATE BT 2017 • Q9 MCQ • 1 Mark

Section 2: General Biotechnology

Biomolecules, enzyme kinetics

Subtopic: Fundamentals of Biomolecules, enzyme kinetics

Question Statement:

Which one of the following techniques can be used to determine the structure of a 15 kDa globular protein at atomic resolution?

Options:

  • (A) Raman spectroscopy
  • (B) IR spectroscopy
  • (C) UV spectroscopy
  • (D) NMR spectroscopy

Official Answer Key:

D

Step-by-Step Solution & Explanation

### **Official Solution & Step-by-Step Derivation (GATE BT 2017 Q.09)** **1. Governing Concept & Question Classification**: - **Section**: BT - **Question Type**: **MCQ** (1 Mark) - **Topic**: Biophysics & Structural Biology (High-Resolution Protein Structure Determination) **2. Detailed Step-by-Step Analysis**: - To determine the three-dimensional tertiary structure of a protein at **atomic resolution** (
lt; 2.5\text{ \AA}$), the scientific community relies on two primary experimental techniques: **X-ray crystallography** and **Nuclear Magnetic Resonance (NMR) spectroscopy** (and more recently, high-resolution cryo-EM for large complexes). - Multi-dimensional heteronuclear NMR spectroscopy ($^1\text{H}$, $^{13}\text{C}$, $^{15}\text{N}$) measures nuclear Overhauser effects (NOEs) between neighboring proton pairs (
lt; 5\text{ \AA}$ apart) in solution, providing distance restraints that enable full 3D atomic structure determination. - NMR is ideally suited for small to moderate-sized globular proteins up to approximately $25 - 30\text{ kDa}$ (such as this 15 kDa protein), because smaller proteins tumble rapidly in solution, yielding narrow, well-resolved spectral resonance lines without excessive relaxation broadening. - **Option-by-Option Evaluation**: - **Option (A) [INCORRECT]**: Raman spectroscopy provides information about vibrational modes and secondary structure content, but cannot determine 3D atomic coordinates. - **Option (B) [INCORRECT]**: Infrared (IR) spectroscopy reports on amide vibrational transitions, giving only broad secondary structural estimates. - **Option (C) [INCORRECT]**: UV-Vis spectroscopy measures electronic transitions of aromatic residues and prosthetic groups, giving no atomic coordinates. - **Option (D) [CORRECT]**: NMR spectroscopy provides complete 3D atomic-resolution structures for a 15 kDa globular protein in solution. **3. Final Answer / Verification Summary**: - **Official GATE Answer Key**: **D** - **Scoring Criteria**: +1.0 Mark (Negative marking: -0.33 marks).

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